PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016426-PA
Common NameOsI_15920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 213aa    MW: 22397.1 Da    PI: 4.7475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016426-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000144203955
                      TCHHHHHHHHHHHHHHH CS
               HLH 39 sKaeiLekAveYIksLq 55
                      +Ka+i+e +++YIk+Lq
  BGIOSGA016426-PA  4 DKATIVEATINYIKNLQ 20
                      8***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-5333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDTDKATIVE ATINYIKNLQ DKIHKMEMLK VEREHAIALA TAATATAAAS ADTALQAPPP  60
SEEENEEHDS GVAAATREMA LADMVHAWEQ QQEAAATGGS HGGHAVPPPP PAASLQTWTG  120
PNMTASLTGD DGFITLSLPH QGGQKNLVAG AVSVLERHHI DVVTATVSAS EQGDNLISLH  180
CHLSPGSSSS QNLTPLDKFK LAMSELMLWV ISV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549950.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154584170.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072680.0AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635110.11e-151PREDICTED: transcription factor bHLH95
TrEMBLB8ATS91e-154B8ATS9_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA016426-PA1e-154(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691